Red lines
are the partition cut-offsGet high quality picture in PostScript Format
Grey shades indicate buried residues in the structures
Get high quality picture in PostScript Format
Evolutionary Trace Result
Innis C.A., Shi J. and Blundell T.L. (2000), Protein Eng., 13(12), 839-847.
Description |
Data file |
Remark |
| Original input alignment | ori.seq | What we received |
| Input alignment in PIR format | target.pir | Format change only (w/o family code) Alignment between input seq and HOMSTRAD(PLUS) family (w/ family code) |
| Alignment used for evolutionary trace | Text HTML PostScript |
Parsed for consistency with corresponding pdb files (if any) |
| Distance matrix for the alignment | target.dst | Input to KITSCH |
| KITSCH output | target.kitsch outfile |
|
| Parsed PDB files (2 in total) | 1bmp.pdb 1tgj.pdb | Download these PDB files if you want to use the Molscript and RasMol script files (see individual structure mapping pages at the bottom) to reproduce high quality pictures for these structures. |
| Raw trace data for each partition | 01.trace 02.trace 03.trace 04.trace 05.trace 06.trace 07.trace 08.trace 09.trace 10.trace | |
| Download All Data Files | ||
| Phylogenetic Tree |
|
Red lines are the partition cut-offsGet high quality picture in PostScript Format |
| Evolutionary Trace |
|
Grey shades indicate buried residues in the structures Get high quality picture in PostScript Format |
Evolutionary Trace Mapped to Each Structure
Suggestions and comments to Jiye Shi