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Protein Structure Modelling
DePristo et al. Cα-trace models
Here you can download the models used to analyze the RAPPER conformational search algorithm and evaluate sidechain modelling on near-native backbones, as described in DePristo et al., "Discrete restraint-based protein modeling and the Cα-trace problem".
These files has been tarred together and compressed with bzip2. Under unix you can expand the archive with:
bzip2 -d FILE.tar.bz2 tar xvf FILE.tar
We have generated ensembles of Cα and sidechain centroid models conformations with RAPPER, for each target in the above list.
Each archive file uncompresses to a subdirectory. In this subdirectory there is another subdirectory for each target, containing the models for that TARGET. There are many files in each target subdirectory:
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